PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544063.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 609aa    MW: 63487.3 Da    PI: 10.0775
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544063.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.4e-08158202144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                      r++W++ Ed  l+ avk+ G g+W+ I r      Rt+ q+  rw
   XP_010544063.1 158 RKKWSPGEDAELIAAVKRCGEGNWAHILRGEFkGERTASQLSQRW 202
                      789************************996555689999999999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.562153209IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-11154207IPR009057Homeodomain-like
SuperFamilySSF466896.36E-11155208IPR009057Homeodomain-like
SMARTSM007175.8E-7157208IPR001005SANT/Myb domain
PfamPF002494.4E-6158202IPR001005SANT/Myb domain
CDDcd116604.06E-13159207No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MADQSDQGKK RFITEGDIAS LLQRYDATTA LKLLQEVAYF AGPKIDWNAL VKKTSTGITN  60
AREYQMLWRH LAYRDSLTPV EDDAQPLDDD SDLDCELEAS PHVSNEASME ANAHVKVMAA  120
SYMPAESNIP DNSTKAPSTE GLNGNGSASG SVASRKKRKK WSPGEDAELI AAVKRCGEGN  180
WAHILRGEFK GERTASQLSQ RWALIRKRCD TSNSAPNQSG LQRTEAQMAA NHALSLAVGN  240
RAPAKKLTVG VSPMAPSGST AEVPAVGTSS SQAQPQPNVV QALPRTAASV PAVKYRVAAV  300
KKAPNSTSRT DLMVTANSVA AAACMAGPST TASVQAEPEK NAAEVVSKAE PGKPISATCM  360
PRPSGGLSVP KTEPGKSVTP ATTSTATAKA QAVAPPNTRH VANGNMNHVA AASSHFTKSA  420
VINPRSEGPV VRTMHHASTA SAFVPKTVSE KRVSAASVPA APPVPSMPNV GKVAQTGPRK  480
PECVQKEQTP KNGASTTVVS QQTKTTSTNS ESNAEMQVAV SKSLDVLPKS MVVESKTTVS  540
PVNRAENKAT TVSPVNGAAS RTNVLPVNGA DGKSKAKDEV NNKDDGLSKL NNGSKGPEVV  600
TVAKSGNGM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155159KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544063.10.0PREDICTED: transcription initiation factor TFIID subunit 12-like isoform X2
TrEMBLD7KJT30.0D7KJT3_ARALL; DNA binding protein
STRINGfgenesh2_kg.1__1026__AT1G09710.10.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.11e-129MYB_related family protein